Browse of TCMCG006C116396 protein

CDS

Accession Number	TCMCG006C116396
gbkey	CDS
Protein Id	XP_013647778.1
Location	join(612674..612849,612966..613231,613297..613466,613550..613766,614021..614367,614778..614957,615034..615169,615257..615405,615563..615674,615783..616354,616454..616577,616668..616945,617030..617140,617258..617320,617474..617665,617782..617841,617945..618013,618303..618449,618534..618653,618750..618866,618994..619149,619217..619279,619380..619450,619713..620124,620233..620335,620422..620531,620653..620724,620821..620896,620978..621085,621167..621308,621392..621457,621547..621763,621837..621891,621974..622065,622161..622224,622320..622690)
Gene	LOC106352690
GeneID	106352690
Organism	Brassica napus

Protein

Length	1927aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA293435
db_source	XM_013792324.1
Definition	nuclear pore complex protein GP210-like isoform X2 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category	UY
Description	Bacterial Ig-like domain (group 2)
KEGG_TC	1.l.1
KEGG_Module	M00427        [VIEW IN KEGG]
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko00002        [VIEW IN KEGG] ko03019        [VIEW IN KEGG]
KEGG_ko	ko:K14314        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko03013        [VIEW IN KEGG] map03013        [VIEW IN KEGG]
GOs	GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005635        [VIEW IN EMBL-EBI] GO:0005737        [VIEW IN EMBL-EBI] GO:0005783        [VIEW IN EMBL-EBI] GO:0012505        [VIEW IN EMBL-EBI] GO:0031967        [VIEW IN EMBL-EBI] GO:0031975        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044444        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGTTCGTATCTCATCGTGCTTCTTCGTCGTGGTTCTGATTCTGCTTTCGATTCGAGAAAGTTCGTCGCAGTTAGGTACTGGTCCGCACATTACTGATGTCAATATACTGTTGCCTCCGAGGATGAAGAATCCAGTAGAGTATCGCCTTCAAGGAAGCGATGGCTGCTTCAAATGGTCATGGGATCATCATGATATTCTCTCGGTTACGCCTGAGTTTAATTCGAGCAGTCACTGCTCCACCAGCGCGCGTCTAAAATCGATTTCGCCTTATAGCGGAAGGAAGGAGACTGCAGTTTATGCAACCGATATACAGACGGGGATGGTGATTCGCTGCAAGGTGTTTATTGACATCTTCTCACGGATTCAGATTTTTCATAACTCTATCAAGCTTGATCTTGATGGACTTTCCATGCTTAGAGTCCGCGCTTTTGATAATGAAGATAACGAGTTCTCCTCACTGGTGGGTCTACAGTTCATGTGGAAGCTAATGCCTGAAAGTGGCGGAGGAACAACGCATCATCTTGCTCATGTCCCTTTGAAGGAATCTCCGTTGACTGACTGTGGGGGACTGTGTGGCTACTTGGATATCCAGAAAAAGCTTGAGGATAGTGGGGTGTTTGCAGATTTGTTTGTGGTGAAGGGAACCAAAATTGGACATGAGAAGGTTTCAGTTCATCTGTTGGAGGCTCCCCTTACCGATATAGCCGATGAAATAGTACTAACAGTAGCAGAGGCCATGTCACTTGAACCTCGTTCACCAGTCTATGTCCTAATGGGTGCTTCTTTTGGTTACACTTTAAAGGTCATGCGTGGGAATGTTCCTCAAGCCGTGCATCTACCATCATCACATCACAGATGGTCTGCGTTGAACTCTTCTGTTGTTCAAGTAGATTCTTTGATAGGTCTGACTAAAGCATTAAGCTTGGGGGTAACAACAGTTGTTGTTGAAGATACCCGGGTTGCTGGCCACATTCAAGGATCATCTATTAATGTTGTCACTCCAGATGCTTTTATCTTGTACATATCACCTTGGTCAACGTCAGGGGATCCTACTACAGAATCGAAATCTTTTCCGTCATCTATGCATTGGTATGTGGTCTCTGGTCGTCAATATCTGATTCAGATGAAGATTTTCTCTGGAAGACCTGATGCACATGAAATCTATATAACTGAGACGGATGATATCAAACTGTACGGAGAAGAGACAGATTATTGGAAAATCGTTTCAGTGCCAGATGATCTTTCCTCTGAATATGGTTGGCGAAATTCTAGAATTTTGAAAGCATTCTCACCAGGATTAGGAGAGCTGACAGCTGCATTGACTTACTTCAATGGACATCAGAATTCAAAAGAGGTTCTCAAGGTTGTCCAAGACATTGTGGTTTGTGAAAAGGTGCACTTCACATTGAACAGTGAAGATGACGCACCTAAGATTCTACTTCCTTGGACCCCTGCTGTATATCAAGAGATGGAGCTAATTGTGACAGGAGGTTGTGCGAAAGCATCGAGTGACTACAAGTGGTTTACTTCAGATATGAGCATTTTGTCTGTGTCAGCTTATGGAATTATCCAGGCAAAGAGGCCTGGAATAGCCACTGTAAAGGTGGTGTCGACTTTCGATTCACAAAATTTCGATGAGGTTATTGTTGAAGTTTCCATTCCATCCTCTATGGTTATGTTGCAATACTTCCCAGTAGAGACAGTGGTTGGATCACACCTGCAAGCAGCTGTCACAATGAAGGCTTTAAATGGTGCCTCATTCTCTAGATGTGATGCTTTCAACTCATTGATAAAGTGGAAGACAGAGAGTGACTCTTTTGTTATAGTTAATGCAACAGCCGAGATGATGATGTTGGAAGAATTAAGAAGCACGGAGTCCAGTCCTCCTTGTTCTCGGGCTTATATATATACTTCTTCTCCTGGCCGCACAGTGCTACAAGCAACTCTAGCAAAAGAGTTCCATTATTTTGATAAGTCGTTAAGCGAATCAATTGATTTGAAAGCAACTTTAAGTATCGGGGCCTATCTGCCACTTCTTATCCGACAAGATAGTGATGGGAATCATCATGGTGGATATTGGTTTGATAAGACACAAGAAGAAACTGATATTGGTGTTAGTAACCTCTATCTTGTACCTGGGACATATGTTGATGTGATGCTTCTGGGGGGACCTGAAAGATGGGATGACAATGTTGAGTTCACTGAGACTGTGACTAAAGTGAATGAAGATGAGGAGGACCTTACAAATGGAGATAACATTCATCACAACTTTGACCACCATGCTAACATGTTTAGAGTTTCGTGCCAGACGCTTGGTTCTTATAAACTGATATTCCAGCGTGGAAATCTGGTCGGGGTGGACCATCCTTTACCTGCAGTGGCAGAAGCTTTCTTATCTGTTCAATGCAGCTTACCATCCTCTGTTGTGCTCATTGTTGATGAACCTGTTAACAAGCTTAGTGTGATTAGAGCTGCTAGTCAAGCTGAGAGGGCACCAGGACGACTTCGTGTAACTCCTGTGACTGTATCAAATGGGCAAATAATTCGAGTGGCTGCTGTTGGTATTAGCGACTCTGGAGAAGCTTTTTCAAACTCATCAACTCTTTCACTCAGGTGGGAACTGAGTAGTTGCGACAATTTGGCTTCTTGGGACGATGATTATAATTCAAAAATGACAAAGACTAGCTGGGAGAGATTTCTAGCTCTTCGTAATGAATCTGGATTGTGCACTGTACGGGCTACAGTTTCTGGTATTGATCATTCTGGAAAAACCCAATACTCATCTCTGCTTCCAGAAGTGTCCGAAAGTACTCTCACAGATGCTGTACGCTTACAGTTGGTTTCTACACTAAGAGTCACGCCAGAGTTCAACCTGGTTTTTTTCAATCCTAATGCCAAGGTTAATTTGTCAATGACTGGAGGAAGCTGTTTGTGGGAAGCAGTTGTGAATGATTCTCGTGTAGCAGAAGTGATTAGACCCCCATCTGGCCTGCAATGCTCGCAAATGACCCTGTGTCCAAAAGGGTTAGGGACTACACTTGTGACCGTATATGATATTGGGGTCTCTCCTCCACTTTCAGCTCTTGCGGTGATTAAAGTTGCAGACATAGACTGGATAAAAATTGCATCTGGGGATGAGATAAGTATAATGGAAGGAAGTACACACTCCTTTGATCTACTGACTGGCATTGACGATGGGACGACCTTTGATTCTTCCCAGTACCCGCTAATGGATATTATGGTGCATATTGAGGATGATCTGGCGGAGCATGTTTCTGTCGATGGTAATCCACTTTCTGTTGGTGAACACGTGGCAACTTCTTCATTCAAAGTAGCTGCTAGACGCCTGGGAATCACAACACTATATGTTAGCGCGAGACAACAATCAGGAGATAAAGTGGTGAGCCAAACTATTAAAGTGGAAGTTTATGCCCCACCAAGACTTCACCCACAAGGAATATTTCTTGTTCCTGGTGCTTCTTACGTGCTCACTGTTGAAGGAGGCCCAACCATGAATGTTTCTGTTGACTACACCACTGTAGATAACCAAGTTGCAAAGATCGAGAAATCAGGACGCCTCTATGCAACATCACCTGGCAACACGACAATCTATGCAACAATATATGGGAGTGAAGGTACTGTAGTTTGTGAAGCAGTTGGAAATGCGGAAGTTGGACTTCCTGCTGCTGCAACGCTGATAGCTCAAAGTGATACTGTGGCTGTTGGCCGTGAAATGCCTATATTTCCATCATTTTCTCAGGGAGATCTTTTGTCTTTCTATGAGCTCTGCAGAGCATACCGATGGACTATCGAAGATGAGGAGGTGTTGAGTTTCCATGTACCGTCTATTGACGTGGAAGAGAATGCTGGCTTTGTCAATGTCGTCCAAGGAAGATCTGCTGGGAAAACCAGAGTCACCATTGCGTTCTCATGTGATTTCGTGTCTCCTGGCTTCTACTCCGAATCTAGAACATATGAAGCATCAATAGTTTTATCTGTTGTGCCTGATCTTCCTCTTTCTCTCGGGATTCCTATGACCTGGGTTCTTCCGCCATTTTTTACGTCATCTAGTCTATTGCCATCATCTCCTGAGACACCAAAGCACAAGGATGGTCAAAGTCACAGAGGCAATGTAGTCTATTCCCTATTGAAAGACTGTAGTTCTCGGGCTGACGTCGAACGAGATACTATATCAATTAACGGCGGAAGCATCAAAACTACAGAAATCAACAATGTTGCATGTATTCAAGCCAAAGACCGCACAAGTGGAAGGATCGAGATTGCTGCTTGTGTGAGGGTTGCAGAGGTTGCTCAAATAAGAATGAAGAGTGAAATGATCCCTTTTCACGTGGTGGATCTTGCTGTTGGTGGTGAACTTGAACTTCCAATAAATTACTATGACACTTTAGGAATCGGTTTTCTAGAAGCACATGGTGTTACTACATACAACGTTGAAACCAATCATCGTGATGTTGTGTCTATTAAGACTGTCAATGACCAAACAAGTGTCTACATTAAGGGAATAAAACATGGTAAAGCTTTAATTCGGGTCTCCATTGGCGGTAATCTGAGGAAAGCAGACTACGTTCTGGTTTCAGTTGGGGCACATATCCATCCTCAAAAACCTGTCATTCACACTGGAAATATTCTGAATTTCAGCGTTACAGGGGCTGATCATCAAGTCTCTGGTCAATGGGTTTCATCGAACAGGAGTGTCCTGTCCGTCAATGCAGTATCCGGCCAAGCTAAAGCAATCGGCCAAGGGTCAGCTCACGTTACATTTGAAGGTCATGGTTTGAAGCTGCAAACAAAAGTCACAGTGCTACTTGGAAACACCATATATGTTGACTCTCCTAGAGAAACACTAACAAATGTCCACGTCCCTACAGAAGGATATAGCTTTCCTGTAAAATTCAGGGAGAATACGTTTGTGAACGGAAACAGGAACACATTCAACTGCCAAGTAGACCCTCCATTTATAGGATATGCAAAGCCATGGGTGGATCTTGACAGTGGAGACACTCGTTGTCTTTTCTTCCCATACTCACCGGAGCATCTGGTTCACTCAATGTCTAGATCAAAAGACACAAAATCGCATGTGTCCTTCTCCATTAATGCTTCAGTTAAAGAAGGTCGACAGGTGTCGGGATCTGCGTCTGCACTTCTTATTGGAGGGTTTTCTGTAGCATGGCCAAACAAGTTGAATATAAACCCGGATTCAAACAAGACTACAATTTCAGTACAAGGGAACACCGATGTTCAAATTCACTGGCAAAGCAAAGGAAGGTTATCGATCAGCTTGATCAAGAGAGAAGATTATGGTATCGCAGGGCGTGCACTATACGAGGTGAATGTGCTTAATAGATCAGAGCAATTCACAGATATAATATTCATCACTCTCCCTGCTACTGGCCAAAGTGTAGAAATCGATTTCTCTTATGATACGGGTGAATCCTTAGTAGCGCCATCTGTGAGAAAAGATGGATACCTGTTTACGATACTATGGGGTGTTTTAGTGGTGATTGTATCGGTGGTCATCTTGATGAAAGTGATAGATAGACCAATTGGTCCAGCTGGGGCCACTAGAGTTGCAACAAACGGTGTTGCAGCAACAGCAGGAGCACCGGGAACACCAGAAAGAAGAAGTGGTGCAGTGATATACCATGAGGAATCTCCAAGAACACCATCACCATTTATGGAGTATGTCAAGAGGACTGTGGATGAGACTCCTTACTACAGAAGAGAAGGGAGGAGGAGGTTTAATCCTCAAAACACTATGTAG

Protein:   MVRISSCFFVVVLILLSIRESSSQLGTGPHITDVNILLPPRMKNPVEYRLQGSDGCFKWSWDHHDILSVTPEFNSSSHCSTSARLKSISPYSGRKETAVYATDIQTGMVIRCKVFIDIFSRIQIFHNSIKLDLDGLSMLRVRAFDNEDNEFSSLVGLQFMWKLMPESGGGTTHHLAHVPLKESPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTDIADEIVLTVAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVHLPSSHHRWSALNSSVVQVDSLIGLTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDAFILYISPWSTSGDPTTESKSFPSSMHWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGEETDYWKIVSVPDDLSSEYGWRNSRILKAFSPGLGELTAALTYFNGHQNSKEVLKVVQDIVVCEKVHFTLNSEDDAPKILLPWTPAVYQEMELIVTGGCAKASSDYKWFTSDMSILSVSAYGIIQAKRPGIATVKVVSTFDSQNFDEVIVEVSIPSSMVMLQYFPVETVVGSHLQAAVTMKALNGASFSRCDAFNSLIKWKTESDSFVIVNATAEMMMLEELRSTESSPPCSRAYIYTSSPGRTVLQATLAKEFHYFDKSLSESIDLKATLSIGAYLPLLIRQDSDGNHHGGYWFDKTQEETDIGVSNLYLVPGTYVDVMLLGGPERWDDNVEFTETVTKVNEDEEDLTNGDNIHHNFDHHANMFRVSCQTLGSYKLIFQRGNLVGVDHPLPAVAEAFLSVQCSLPSSVVLIVDEPVNKLSVIRAASQAERAPGRLRVTPVTVSNGQIIRVAAVGISDSGEAFSNSSTLSLRWELSSCDNLASWDDDYNSKMTKTSWERFLALRNESGLCTVRATVSGIDHSGKTQYSSLLPEVSESTLTDAVRLQLVSTLRVTPEFNLVFFNPNAKVNLSMTGGSCLWEAVVNDSRVAEVIRPPSGLQCSQMTLCPKGLGTTLVTVYDIGVSPPLSALAVIKVADIDWIKIASGDEISIMEGSTHSFDLLTGIDDGTTFDSSQYPLMDIMVHIEDDLAEHVSVDGNPLSVGEHVATSSFKVAARRLGITTLYVSARQQSGDKVVSQTIKVEVYAPPRLHPQGIFLVPGASYVLTVEGGPTMNVSVDYTTVDNQVAKIEKSGRLYATSPGNTTIYATIYGSEGTVVCEAVGNAEVGLPAAATLIAQSDTVAVGREMPIFPSFSQGDLLSFYELCRAYRWTIEDEEVLSFHVPSIDVEENAGFVNVVQGRSAGKTRVTIAFSCDFVSPGFYSESRTYEASIVLSVVPDLPLSLGIPMTWVLPPFFTSSSLLPSSPETPKHKDGQSHRGNVVYSLLKDCSSRADVERDTISINGGSIKTTEINNVACIQAKDRTSGRIEIAACVRVAEVAQIRMKSEMIPFHVVDLAVGGELELPINYYDTLGIGFLEAHGVTTYNVETNHRDVVSIKTVNDQTSVYIKGIKHGKALIRVSIGGNLRKADYVLVSVGAHIHPQKPVIHTGNILNFSVTGADHQVSGQWVSSNRSVLSVNAVSGQAKAIGQGSAHVTFEGHGLKLQTKVTVLLGNTIYVDSPRETLTNVHVPTEGYSFPVKFRENTFVNGNRNTFNCQVDPPFIGYAKPWVDLDSGDTRCLFFPYSPEHLVHSMSRSKDTKSHVSFSINASVKEGRQVSGSASALLIGGFSVAWPNKLNINPDSNKTTISVQGNTDVQIHWQSKGRLSISLIKREDYGIAGRALYEVNVLNRSEQFTDIIFITLPATGQSVEIDFSYDTGESLVAPSVRKDGYLFTILWGVLVVIVSVVILMKVIDRPIGPAGATRVATNGVAATAGAPGTPERRSGAVIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQNTM